NEUBIAS / Defragmentation_TS2_EOSC-Life_2023Links
"Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analysis and new integrated methods for cloud computing applied to life sciences.
☆10Updated 2 years ago
Alternatives and similar repositories for Defragmentation_TS2_EOSC-Life_2023
Users that are interested in Defragmentation_TS2_EOSC-Life_2023 are comparing it to the libraries listed below
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- ☆23Updated last month
- ☆11Updated this week
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- ☆15Updated 2 years ago
- Browse your OMERO database from within napari.☆37Updated 2 weeks ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 3 months ago
- dask empowered fast4dreg☆11Updated 7 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆34Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 9 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 2 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- ☆50Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 2 months ago
- ☆16Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆12Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ☆13Updated 5 years ago
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago