psobolewskiPhD / napari_scriptsLinks
Collection of useful (to me) python scripts for interacting with napari
☆11Updated 3 years ago
Alternatives and similar repositories for napari_scripts
Users that are interested in napari_scripts are comparing it to the libraries listed below
Sorting:
- ilastik plugin for napari☆14Updated 3 weeks ago
- Reference implementation of the Graph Exchange File Format☆32Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- python tools for BigDataViewer☆22Updated last year
- 1d plotting in napari-based canvas.☆25Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ☆12Updated 4 months ago
- ☆22Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Updated 9 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 6 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- ☆23Updated 4 years ago
- StarDist plugin for napari☆38Updated last year
- ☆36Updated last year
- Gamified image segmentation quality estimation☆19Updated 8 months ago
- ☆13Updated 8 months ago
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated 2 weeks ago
- GPU-accelerated Image Processing library for Python☆52Updated this week
- Process images using SimpleITK in napari☆23Updated 8 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- Particle tracking by solving linear assignment problem.☆61Updated last month