☆15Jun 26, 2025Updated last year
Alternatives and similar repositories for chronostrain
Users that are interested in chronostrain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ☆33Oct 1, 2026Updated last month
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 10 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆28Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computation of Unifrac using Earth Movers Distance☆10Jun 20, 2022Updated 4 years ago
- FEDKEA: Fine-tuned ESM-2 and Distance-based KNN for Enzyme Annotation☆12Oct 31, 2025Updated last year
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆44Updated this week
- Bioinformatics program inStrain☆193Oct 20, 2026Updated 2 weeks ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 11 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ancient Metagenome Assembler For Heavily Damaged Datasets☆12Oct 27, 2025Updated last year
- ☆21Dec 15, 2020Updated 5 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- ☆10Apr 6, 2024Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- ☆26Apr 20, 2023Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆24Oct 28, 2026Updated last week
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆27Aug 20, 2026Updated 2 months ago
- Metagenomic Estimation of Dietary Intake and Content.☆48Aug 5, 2026Updated 2 months ago
- Trevor Wishart's GUI Front End for the CDP System☆20May 3, 2026Updated 6 months ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆25Oct 21, 2026Updated last week
- Gene copy number prediction from k-mer frequencies☆18Apr 15, 2026Updated 6 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆78Aug 13, 2026Updated 2 months ago
- ☆23Sep 28, 2026Updated last month
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage☆39Oct 12, 2026Updated 3 weeks ago
- Scripts to analyse metagenome-wide metabolic models☆13Aug 9, 2023Updated 3 years ago
- ☆18Jul 27, 2023Updated 3 years ago
- ☆32Jun 12, 2023Updated 3 years ago
- IPHOMED☆12Mar 30, 2026Updated 7 months ago