caporaso-lab / cual-idLinks
A package for creating and managing sample identifiers in comparative -omics datasets.
☆23Updated 8 years ago
Alternatives and similar repositories for cual-id
Users that are interested in cual-id are comparing it to the libraries listed below
Sorting:
- WDL plugin for pytest☆49Updated 2 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Updated 10 years ago
- A Python library to work with high-throughput sequencing data in the context of data integration☆14Updated 8 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 4 years ago
- Visualization and charting JS library for streaming genomic data☆19Updated last year
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Updated last week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- NExt generation Analysis Toolbox☆14Updated 10 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- Javascript library for visualizing genomics data with D3.☆19Updated 9 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18Updated 8 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆105Updated 3 years ago
- 📈 DNA Sequence Visualization for Humans☆42Updated 4 years ago
- SVG based genome viewer written in javascript using D3☆33Updated 10 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36Updated 7 months ago
- Python graph database framework for bioinformatics☆95Updated 4 years ago
- Deprecated☆101Updated 6 years ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Updated 4 years ago