sequencing / NxTrim
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
☆54Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for NxTrim
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 6 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago