sequencing / NxTrimLinks
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
☆53Updated 7 years ago
Alternatives and similar repositories for NxTrim
Users that are interested in NxTrim are comparing it to the libraries listed below
Sorting:
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago