cfce / chilin
ChIP-seq DC and QC Pipeline
☆34Updated 4 years ago
Alternatives and similar repositories for chilin:
Users that are interested in chilin are comparing it to the libraries listed below
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- BAGEL software☆27Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- IDR☆31Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- ☆33Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- ☆16Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago