cfce / chilin
ChIP-seq DC and QC Pipeline
☆34Updated 4 years ago
Alternatives and similar repositories for chilin:
Users that are interested in chilin are comparing it to the libraries listed below
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- simplified cellranger for long-read data☆18Updated 6 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆33Updated 5 years ago