BitSeq / BitSeqLinks
BitSeq code
☆16Updated 4 years ago
Alternatives and similar repositories for BitSeq
Users that are interested in BitSeq are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- We have moved to https://github.com/limix/limix.☆23Updated 8 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 2 months ago
- Q ChIP-seq peak caller☆18Updated last year
- RSS: Regression with Summary Statistics☆51Updated last year
- Applying IDR analysis to Homer peaks.☆15Updated 5 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- ☆11Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- ☆21Updated 8 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- ☆45Updated 9 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last week
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated 2 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago