BitSeq / BitSeq
BitSeq code
☆16Updated 3 years ago
Alternatives and similar repositories for BitSeq:
Users that are interested in BitSeq are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆11Updated 7 years ago
- ☆19Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Genetics training camp☆21Updated 4 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆68Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago