mskcc-omics-workflows / modulesLinks
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
☆11Updated last week
Alternatives and similar repositories for modules
Users that are interested in modules are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆78Updated 3 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 6 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 8 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 7 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated this week
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- ☆40Updated 6 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆48Updated 2 weeks ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- Reference genome resource manager☆74Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- ☆84Updated 4 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Updated 4 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Gene Fusion Visualiser☆51Updated 3 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- gatk4 RNA variant calling pipeline☆58Updated this week
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year