mskcc-omics-workflows / modulesView external linksLinks
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
☆11Updated this week
Alternatives and similar repositories for modules
Users that are interested in modules are comparing it to the libraries listed below
Sorting:
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- ☆11Apr 25, 2024Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Feb 5, 2026Updated last week
- Python function for TMB snake plots☆16Aug 6, 2020Updated 5 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- Microsatellite Instability Classification using Multiple Instance Learning☆27Mar 3, 2025Updated 11 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- ☆24Dec 18, 2024Updated last year
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 9 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 weeks ago
- ☆12Nov 20, 2018Updated 7 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Jul 26, 2024Updated last year
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 weeks ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 9 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Mar 21, 2025Updated 10 months ago
- Scripts and files for the annual Short Read Analysis Workshop☆12Jul 21, 2025Updated 6 months ago
- Model-based tumour subclonal deconvolution using population genetics☆34Dec 2, 2025Updated 2 months ago
- CryoBoltz code for protein structure prediction with cryo-EM guidance. NeurIPS 2025.☆21Nov 30, 2025Updated 2 months ago
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆10Sep 2, 2021Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Apr 18, 2024Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Code repository for the paper "Geometric Scattering for Graph Data Analysis"☆13Aug 26, 2019Updated 6 years ago
- R package for analysis of single-cell data using graphs☆10Jun 8, 2023Updated 2 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆12Mar 12, 2024Updated last year
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 7 months ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆11Nov 13, 2025Updated 3 months ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- This is a python script for getting sensor values from the TI SensorTag using a Raspberry Pi 3 Model B☆10Aug 6, 2019Updated 6 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- Compressed Graph Representation for Scalable Molecular Graph Generation☆11Sep 24, 2020Updated 5 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆18Jan 21, 2026Updated 3 weeks ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 6 years ago