TRON-Bioinformatics / splice2neoLinks
R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
☆14Updated last week
Alternatives and similar repositories for splice2neo
Users that are interested in splice2neo are comparing it to the libraries listed below
Sorting:
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- simplified cellranger for long-read data☆19Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- iread☆25Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated 2 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆15Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- interactive plots for differential expression analysis☆34Updated 4 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- ☆23Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 2 weeks ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 weeks ago
- ☆34Updated 10 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- DriverPower☆26Updated 9 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago