TRON-Bioinformatics / splice2neo
R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
☆14Updated last week
Alternatives and similar repositories for splice2neo:
Users that are interested in splice2neo are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- simplified cellranger for long-read data☆18Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 6 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆16Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Filter and prioritize fusion calls☆20Updated 6 months ago
- HOT regions paper☆11Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆21Updated 2 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆16Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 3 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year