ahwagner / vicckb
python module for querying the vicc knowledgebase integration datastore
☆10Updated last year
Alternatives and similar repositories for vicckb:
Users that are interested in vicckb are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- ☆40Updated 6 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Published at Bioinformatics☆12Updated 6 months ago
- ☆23Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated 9 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 weeks ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- From QC to summary statistics☆16Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆10Updated 4 years ago
- Code for EpiMap data browser☆14Updated 7 months ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- DriverPower☆26Updated this week