python module for querying the vicc knowledgebase integration datastore
☆11Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for vicckb
Users that are interested in vicckb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Jan 10, 2026Updated 2 months ago
- Clinical interpretation of somatic mutations in cancer☆51Feb 20, 2025Updated last year
- A python interface for the CIViC db application☆11Feb 19, 2026Updated last month
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆30Updated this week
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Associations of genomic features, drugs and diseases☆48Dec 8, 2022Updated 3 years ago
- Spatial Simulation of Tumor Growth☆14Feb 24, 2017Updated 9 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆12Feb 27, 2026Updated 3 weeks ago
- ☆13Apr 22, 2021Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆11Feb 25, 2026Updated last month
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- ☆11May 25, 2025Updated 10 months ago
- A list of resources for metadata tools, standards and/or development☆11Jun 20, 2018Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- Main codes for AD epigenetics paper by Nativio et al.☆11Dec 7, 2019Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 3 months ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Central repository for the VICC metakb web application☆15Mar 18, 2026Updated last week
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package to plot maps of clone distributions in somatic evolution☆20Jan 8, 2024Updated 2 years ago
- Cancer Whitepaper☆48Feb 28, 2023Updated 3 years ago
- 使用Python的Flask框架开发Web项目的模板,规范代码约束,增加Swag,CURD、ORM等模板☆12Nov 22, 2024Updated last year
- ☆23Aug 17, 2025Updated 7 months ago
- ☆20Aug 20, 2024Updated last year
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 10 months ago
- ☆23Sep 4, 2018Updated 7 years ago