ctDNA / TNERLinks
TNER: Tri-Nucleotide Error Reducer for ctDNA detection
☆21Updated 6 years ago
Alternatives and similar repositories for TNER
Users that are interested in TNER are comparing it to the libraries listed below
Sorting:
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- ☆46Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆54Updated 3 years ago
- ☆26Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆26Updated 6 years ago
- CN-Learn☆30Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Updated 8 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆51Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago