ctDNA / TNER

Related projects: ⓘ

• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 3 years ago
• nygenome / Conpair
  Concordance and contamination estimator for tumor–normal pairs
  ☆53Updated 4 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Updated last year
• ikalatskaya / ISOWN
  ☆44Updated 4 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆35Updated 7 years ago
• niu-lab / msisensor-ct
  Microsatellite instability (MSI) detection for cfDNA samples.
  ☆17Updated 3 years ago
• girirajanlab / CN_Learn
  CN-Learn
  ☆29Updated 4 years ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆21Updated last year
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆30Updated 2 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆59Updated 5 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆39Updated 9 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆49Updated 6 months ago
• RahmanTeam / DECoN
  ☆49Updated last year
• gatk-workflows / gatk4-mitochondria-pipeline
  This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…
  ☆20Updated 4 years ago
• nanoporetech / pipeline-pinfish-analysis
  Pipeline for annotating genomes using long read transcriptomics data with pinfish
  ☆27Updated 3 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆22Updated 6 months ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆94Updated 2 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• pughlab / bamgineer
  Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
  ☆37Updated 4 years ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• VUmcCGP / wisecondor
  WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…
  ☆44Updated 4 months ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆45Updated last month
• FoundationMedicineInc / SGZ
  ☆37Updated 7 months ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆30Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 2 years ago
• theodorc / Atlas-CNV
  Method to detect exonic CNVs in NGS Gene Targeted Panels
  ☆16Updated 4 years ago
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆13Updated 11 months ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆64Updated 2 weeks ago