ga4gh / task-execution-schemas
☆83Updated last month
Alternatives and similar repositories for task-execution-schemas:
Users that are interested in task-execution-schemas are comparing it to the libraries listed below
- The WES API is a standard way to run and manage portable workflows.☆83Updated 6 months ago
- A repository for the schemas used for the Data Repository Service.☆61Updated 3 weeks ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 5 months ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 3 months ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- Rich IDE support for Workflow Description Language☆42Updated 2 weeks ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated this week
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 9 months ago
- An app store for scientific workflows, tools, notebooks, and services☆125Updated this week
- GA4GH Variation Representation Python Implementation☆55Updated this week
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 3 weeks ago
- WDL plugin for pytest☆48Updated last year
- Workflow Description Language developer tools & local runner☆188Updated this week
- A collection of reusable WDL tasks. Category:Other☆86Updated this week
- Workflow Execution Service Backend☆18Updated this week
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 5 months ago
- Trigger CWL workflows via GA4GH WES and TES☆17Updated last month
- Job Manager API and UI for interacting with asynchronous batch jobs and workflows.☆26Updated this week
- ☆11Updated 8 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- WDL and CWL compiler for the DNAnexus platform☆33Updated last week
- conda recipes for genomic data☆85Updated 3 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 3 weeks ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago