☆93Feb 25, 2026Updated last week
Alternatives and similar repositories for task-execution-schemas
Users that are interested in task-execution-schemas are comparing it to the libraries listed below
Sorting:
- APIs for discovering genomics tools, their metadata and their containers☆34Feb 26, 2026Updated last week
- The WES API is a standard way to run and manage portable workflows.☆88Feb 20, 2026Updated 2 weeks ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.☆137Updated this week
- ☆11Oct 21, 2016Updated 9 years ago
- [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute☆18Sep 29, 2023Updated 2 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆19Mar 2, 2023Updated 3 years ago
- An app store for scientific workflows, tools, notebooks, and services☆131Updated this week
- A repository for the schemas used for the Data Repository Service.☆63Jan 12, 2026Updated last month
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆43Feb 4, 2026Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- A middleware abstraction library that provides a simple programming interface to various compute and storage resources.☆37May 30, 2024Updated last year
- Workflow Description Language developer tools & local runner☆200Feb 8, 2026Updated 3 weeks ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆38Feb 5, 2026Updated last month
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,053Feb 25, 2026Updated last week
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- workflow and resource management system for bioinformatics data analysis☆70Oct 29, 2020Updated 5 years ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- resource for unix and SGE beginners☆24Feb 17, 2023Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 10 years ago
- Common Workflow Language reference implementation☆362Updated this week
- The Terra Data Repository built by the Jade team.☆13Updated this week
- Toolchest Python client☆15Sep 6, 2023Updated 2 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Feb 20, 2020Updated 6 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.☆276Feb 3, 2026Updated last month
- Specification for the Workflow Description Language (WDL).☆844Feb 25, 2026Updated last week
- A scalable genome browser. Apache 2 licensed.☆126Dec 2, 2022Updated 3 years ago
- a place for GA4GH-related wiki pages☆16Aug 3, 2017Updated 8 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 9 years ago
- C# implementation of the GA4GH TES API; provides distributed batch task execution on Microsoft Azure☆37May 16, 2025Updated 9 months ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 8 years ago