broadinstitute / firecloud-orchestrationLinks
☆31Updated this week
Alternatives and similar repositories for firecloud-orchestration
Users that are interested in firecloud-orchestration are comparing it to the libraries listed below
Sorting:
- Rawls service for DSDE☆25Updated this week
- Bioinformatics for the Scala programming language☆112Updated 2 months ago
- workbench identity and access management☆41Updated 3 weeks ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Notebook service☆44Updated last week
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 8 months ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 2 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Updated 7 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- FireCloud user interface for web browsers.☆19Updated 2 months ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 2 years ago
- ☆21Updated 6 years ago
- machine learning for genomic variants☆146Updated last month
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 9 years ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆239Updated 2 weeks ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- GenomicsDB☆110Updated 2 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 4 years ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆174Updated this week
- Models and APIs for Genomic data. RETIRED 2018-01-24☆219Updated 3 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 10 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- An app store for scientific workflows, tools, notebooks, and services☆130Updated this week
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated 3 weeks ago
- ☆15Updated 7 months ago
- ☆92Updated 3 weeks ago