Duke-GCB / GGR-cwlLinks
CWL tools and workflows for GGR
☆22Updated 4 years ago
Alternatives and similar repositories for GGR-cwl
Users that are interested in GGR-cwl are comparing it to the libraries listed below
Sorting:
- ☆69Updated 3 years ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 9 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 2 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Analysis from kallisto paper☆32Updated 10 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- ☆82Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆78Updated 11 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Mapped QC analysis program☆43Updated 7 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆35Updated 5 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago