Duke-GCB / GGR-cwlLinks
CWL tools and workflows for GGR
☆21Updated 3 years ago
Alternatives and similar repositories for GGR-cwl
Users that are interested in GGR-cwl are comparing it to the libraries listed below
Sorting:
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆82Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- ☆68Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago