BD2KGenomics / toil-scripts
Toil workflows for common genomic pipelines
☆33Updated 5 years ago
Alternatives and similar repositories for toil-scripts:
Users that are interested in toil-scripts are comparing it to the libraries listed below
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 4 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- ☆30Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago