BD2KGenomics / toil-scriptsLinks
Toil workflows for common genomic pipelines
☆33Updated 6 years ago
Alternatives and similar repositories for toil-scripts
Users that are interested in toil-scripts are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆84Updated 4 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- See the main fork of this repository here >>>☆39Updated last week
- An automated RNA-seq pipeline using Nextflow☆37Updated last month
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33Updated this week
- Fast fusion detection using kallisto☆79Updated 7 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆22Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 9 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 2 months ago