BD2KGenomics / toil-scriptsLinks
Toil workflows for common genomic pipelines
☆33Updated 5 years ago
Alternatives and similar repositories for toil-scripts
Users that are interested in toil-scripts are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Tools for bam file processing☆55Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- ☆16Updated 8 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆29Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago