KHP-Informatics / bioindocker15

Related projects ⓘ

Alternatives and complementary repositories for bioindocker15

• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• arq5x / ggd
  ☆43Updated 8 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 7 years ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 9 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆23Updated 7 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 5 months ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆65Updated 4 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• galaxyproject / galaxy-beta1
  Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…
  ☆12Updated 9 years ago
• blachlylab / mucor
  ☆12Updated 7 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 9 years ago
• SouthGreenPlatform / TOGGLE
  Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
  ☆18Updated 2 years ago
• D-I-L / django-chicp
  ☆9Updated 8 years ago
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated 8 months ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 5 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 4 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago