common-workflow-lab / python-cwlgenLinks
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
☆29Updated 5 years ago
Alternatives and similar repositories for python-cwlgen
Users that are interested in python-cwlgen are comparing it to the libraries listed below
Sorting:
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 8 months ago
- Deprecated☆100Updated 5 years ago
- Python Scientific Pipeline Management System☆71Updated 2 years ago
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago
- The SnoVault general purpose hybrid object-relational database☆16Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 3 weeks ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- ☆87Updated last month
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated 3 weeks ago
- ☆11Updated 8 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- Python utilities for CWL☆39Updated 3 weeks ago
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆104Updated 2 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 8 months ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 9 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆174Updated 4 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Updated 9 years ago
- Python graph database framework for bioinformatics☆93Updated 3 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- ☆10Updated 8 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago