broadinstitute / pywdl
Python bindings for WDL
☆10Updated 7 years ago
Alternatives and similar repositories for pywdl
Users that are interested in pywdl are comparing it to the libraries listed below
Sorting:
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Visualization and charting JS library for streaming genomic data☆19Updated 5 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- ☆43Updated 9 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- Allele frequency filter app☆14Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Updated last year
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12Updated 11 months ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- vcf file manipulation☆21Updated 9 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A library for next generation genomics in Python 3☆18Updated 6 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago