Deprecated
☆101Aug 12, 2019Updated 7 years ago
Alternatives and similar repositories for legacy
Users that are interested in legacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- Common Workflow Language reference implementation☆376Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- ☆11Oct 21, 2016Updated 9 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 6 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,479Jan 8, 2026Updated 7 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 13, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆103Nov 21, 2017Updated 8 years ago
- Java SDK for the Common Workflow Language standards☆16Updated this week
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆41Dec 13, 2025Updated 8 months ago
- A web application to view and share Common Workflow Language workflows☆51Updated this week
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 7 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- ☆82Feb 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆936Aug 6, 2026Updated last week
- ☆21Jul 3, 2019Updated 7 years ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆50Jul 23, 2026Updated 3 weeks ago
- Distributed, Lazy, Pure Functional Build Tool for Reproducible Research☆17Nov 3, 2014Updated 11 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆19Mar 2, 2023Updated 3 years ago
- Lightweight workflows in bioinformatics:☆24Nov 5, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- The WES API is a standard way to run and manage portable workflows.☆93Jun 11, 2026Updated 2 months ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago