Alternatives and similar repositories for legacy

Users that are interested in legacy are comparing it to the libraries listed below

• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆66Updated last year
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• refinery-platform / refinery-platform
  The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …
  ☆104Updated 2 years ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 4 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago
• CampagneLaboratory / NextflowWorkbench
  An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…
  ☆23Updated 9 years ago
• ga4gh / ga4gh-schemas
  Models and APIs for Genomic data. RETIRED 2018-01-24
  ☆218Updated 2 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 6 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 5 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆41Updated 2 years ago
• ga4gh / task-execution-schemas
  ☆89Updated 2 months ago
• hammerlab / cycledash
  Variant Caller Analysis Dashboard and Data Management System
  ☆36Updated 9 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆31Updated last week
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• ssadedin / bpipe
  Bpipe - a tool for running and managing bioinformatics pipelines
  ☆237Updated 2 weeks ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆127Updated this week
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆30Updated 5 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 7 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• chapmanb / cloudbiolinux
  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
  ☆257Updated last year
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• ohsu-comp-bio / funnel
  Funnel is a toolkit for distributed task execution via a simple, standard API.
  ☆130Updated last week
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago