Alternatives and similar repositories for geckopy:

Users that are interested in geckopy are comparing it to the libraries listed below

• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated this week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆59Updated 2 weeks ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆21Updated 2 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆68Updated 4 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆57Updated 6 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆51Updated last week
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 2 weeks ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 4 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 9 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 6 months ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 2 months ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆97Updated 2 weeks ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆38Updated 8 months ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆40Updated this week
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆19Updated 3 months ago
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated last year
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆15Updated 9 years ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 5 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆44Updated last month