ginkgobioworks / geckopyLinks
Enzyme-constrained genome-scale models in python
☆28Updated last year
Alternatives and similar repositories for geckopy
Users that are interested in geckopy are comparing it to the libraries listed below
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- memote – the genome-scale metabolic model test suite☆140Updated last month
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- ReFramed: metabolic modeling package☆61Updated 3 weeks ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated this week
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 2 weeks ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 8 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- The BiGG Models website server☆83Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 2 weeks ago
- Webserver and command line tool for annotating engineered plasmids☆131Updated 2 months ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- nucleic acid folding☆103Updated last month
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆42Updated 2 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated last week
- Python package to study microbial communities using metabolic modeling.☆110Updated 3 weeks ago
- Codon usage tables in code-friendly format + Python bindings☆39Updated 4 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Computation of Microbial Ecosystems in Time and Space☆25Updated 2 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Updated 2 years ago
- General low-level API☆50Updated 3 years ago
- Nanopore Plasmid Sequencing☆33Updated last year