Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
☆37Jul 23, 2026Updated this week
Alternatives and similar repositories for Patchwork
Users that are interested in Patchwork are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Alignment-Based Sequence extraction☆15Feb 14, 2022Updated 4 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆209Nov 23, 2025Updated 8 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Sex Chromosome Identification by Negating Kmer Densities (SCINKD) is a wrapper to implicate the sex chromosome linkage group of a haploty…☆21Jun 21, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated last week
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 11 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 3 months ago
- Interim data for the Darwin Tree of Life Project☆33Jun 7, 2020Updated 6 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 7, 2026Updated 2 weeks ago
- ☆11Nov 12, 2020Updated 5 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆62May 17, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 3 months ago
- ☆20Apr 13, 2022Updated 4 years ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 6 months ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Jun 29, 2026Updated 3 weeks ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆91Jul 17, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆19Jul 19, 2024Updated 2 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆30Jul 1, 2026Updated 3 weeks ago
- ☆17Jun 15, 2026Updated last month
- ☆37Jul 18, 2026Updated last week
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- ☆10Feb 23, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 9 months ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated last year
- ☆30Aug 1, 2023Updated 2 years ago
- ☆136Aug 29, 2024Updated last year
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated 2 months ago
- Assembly statistic visualisation☆96Dec 22, 2023Updated 2 years ago