Alternatives and similar repositories for tonkaz

Users that are interested in tonkaz are comparing it to the libraries listed below

• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆36Updated last week
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 2 weeks ago
• enasequence / read_docs
  ☆13Updated this week
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated last month
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 7 months ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆38Updated 6 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated 2 weeks ago
• pepkit / looper
  Modular job submitter for arbitrary pipelines or commands.
  ☆24Updated last month
• pitagora-network / DAT2-cwl
  Common Workflow Language definition files for workflows introduced in DAT2
  ☆11Updated 3 years ago
• nguyetdang / BioGraph.jl
  A Julia package for handle genome graph in the GFA format.
  ☆11Updated 3 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• popsim-consortium / demes-python
  Tools for describing and manipulating demographic models.
  ☆19Updated 6 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆54Updated last week
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated last week
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆26Updated last week
• nf-core / references
  nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
  ☆19Updated 3 weeks ago
• soedinglab / BaMMmotif
  Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…
  ☆20Updated 8 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• samuell / scicommander
  Run shell commands in a scientifically reproducible and robust way
  ☆23Updated 3 weeks ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• NickRoz1 / gbam
  ☆16Updated 3 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆43Updated last week
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• DEploid-dev / DEploid
  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…
  ☆21Updated 10 months ago
• pangenome / spodgi
  RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
  ☆11Updated last year