Alternatives and similar repositories for tonkaz

Users that are interested in tonkaz are comparing it to the libraries listed below

• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 2 months ago
• enasequence / read_docs
  ☆13Updated last week
• pitagora-network / DAT2-cwl
  Common Workflow Language definition files for workflows introduced in DAT2
  ☆11Updated 3 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 4 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 9 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last week
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 3 weeks ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 11 months ago
• bebatut / enasearch
  A Python library for interacting with ENA's API
  ☆23Updated 3 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• roblanf / minion_multiQC
  multi-tool QC for minion data
  ☆9Updated 7 years ago
• cbg-ethz / smallgenomeutilities
  smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.
  ☆11Updated 3 weeks ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• nf-core / vipr
  Assembly and intrahost / low-frequency variant calling for viral samples
  ☆14Updated 5 years ago
• opengenomebrowser / opengenomebrowser
  ☆16Updated last year
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆20Updated 3 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated 10 months ago
• nf-core / references
  nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
  ☆16Updated 3 weeks ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆23Updated last week
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 3 years ago
• pvanheus / ncbitaxonomy
  a Rust crate for working with a local copy of the NCBI Taxonomy database
  ☆10Updated 2 years ago
• MatthewRalston / kmerdb
  Python CLI for alignment-free genomics.
  ☆12Updated this week
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆15Updated last year