sapporo-wes / tonkaz

Related projects ⓘ

Alternatives and complementary repositories for tonkaz

• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 3 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆12Updated last month
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 4 months ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆20Updated this week
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆20Updated 7 years ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆14Updated last year
• BUStools / BUS-format
  BUS format specification
  ☆13Updated 5 years ago
• seqeralabs / seqera-kit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆25Updated last month
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆16Updated 6 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆20Updated last month
• BioJulia / KmerAnalysis.jl
  K-mer counting algorithms and count-data utilities for the BioJulia framework
  ☆11Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆17Updated this week
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated last year
• nguyetdang / BioGraph.jl
  A Julia package for handle genome graph in the GFA format.
  ☆11Updated 2 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• dib-lab / kProcessor
  kProcessor: kmers processing framework.
  ☆11Updated last year
• enasequence / read_docs
  ☆13Updated last week
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 8 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 5 years ago
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 4 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 3 years ago
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆15Updated 7 months ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• rioualen / gene-regulation
  This project has moved and will no longer be edited here. New link ->
  ☆11Updated 7 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆14Updated 7 months ago