tavareshugo / WindowScanR

Related projects ⓘ

Alternatives and complementary repositories for WindowScanR

• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated last month
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 6 months ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆24Updated 4 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated last year
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 8 months ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 5 years ago
• OchoaLab / genio
  Statistical GENetics Input/Output Functions
  ☆17Updated 2 months ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆20Updated 2 years ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆27Updated 11 months ago
• magnusdv / pedtools
  Tools for working with pedigrees in R
  ☆24Updated 2 months ago
• Gregor-Mendel-Institute / mlmm
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆16Updated 6 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated last year
• QuantGen / MTM
  Multivariate Gaussian Models for Genomic and Pedigree Data
  ☆12Updated 4 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆59Updated 5 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 4 years ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 4 months ago
• grunwaldlab / analysis_of_microbiome_community_data_in_r
  This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…
  ☆17Updated 11 months ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆35Updated last year
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated 2 months ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 4 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated last year
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆14Updated 5 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆68Updated last year
• YuLab-SMU / ggtreeDendro
  Drawing 'dendrogram' using 'ggtree'
  ☆12Updated 3 weeks ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated last month
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated 10 months ago
• kbroman / qtl
  R/qtl: A QTL mapping environment
  ☆77Updated 3 months ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated 4 months ago