R package for sliding window analysis
☆15Jul 13, 2018Updated 7 years ago
Alternatives and similar repositories for WindowScanR
Users that are interested in WindowScanR are comparing it to the libraries listed below
Sorting:
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Population assignment analysis using R☆15Jul 4, 2025Updated 8 months ago
- ☆15Jun 6, 2023Updated 2 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated 3 weeks ago
- Biomark Fluidigm qPCR data set: processing and analysis☆11Apr 8, 2024Updated last year
- Scripts☆10Jun 29, 2016Updated 9 years ago
- Tracebacks for Humans (in Jupyter notebooks)☆12Dec 30, 2025Updated 2 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆11Mar 10, 2022Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 6 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Oct 2, 2024Updated last year
- SODAR: System for Omics Data Access and Retrieval☆19Updated this week
- Bayesian No-Effect-Concentration estimation in R☆15Dec 19, 2025Updated 3 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆21Jan 19, 2026Updated 2 months ago
- RADseq workflow using STACKS☆61Mar 11, 2026Updated last week
- Code to compute the XP-CLR statistic to infer natural selection☆103Jun 13, 2022Updated 3 years ago
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- Material for the RNAseq course☆10Aug 8, 2019Updated 6 years ago
- R package to implement template ICA☆11May 20, 2025Updated 10 months ago
- ☆13Jan 29, 2021Updated 5 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆38Feb 28, 2026Updated 3 weeks ago
- ☆12Feb 12, 2024Updated 2 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- ☆13Oct 7, 2024Updated last year
- BiBiGrid is a tool for an easy cluster setup inside a cloud environment.☆16Updated this week
- Collection of various scripts☆80Feb 18, 2026Updated last month
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Aug 14, 2024Updated last year
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Nov 18, 2020Updated 5 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Jul 22, 2019Updated 6 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago