ZAEDPolSl / MrGSEALinks
MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between changes of gene expression due to different phenotypes.
☆9Updated 2 years ago
Alternatives and similar repositories for MrGSEA
Users that are interested in MrGSEA are comparing it to the libraries listed below
Sorting:
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- ☆12Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated 3 months ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Hierarchical Random Forest for Information Transfer☆12Updated 4 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- ☆16Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Updated 7 months ago
- ☆16Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated 2 months ago
- ☆27Updated last year
- ☆13Updated last year
- ☆10Updated 2 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- cEll tyPe enrIChment☆15Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 4 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 10 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆20Updated 2 weeks ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago