jeffhussmann / knock-knockView external linksLinks
toolkit for analyzing genome editing experiments
☆21Jan 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for knock-knock
Users that are interested in knock-knock are comparing it to the libraries listed below
Sorting:
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆20May 2, 2022Updated 3 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- Source code for integrative nonnegative matrix factorization☆19Jul 12, 2018Updated 7 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- Co-expression network management based on WGCNA + k-means☆21May 11, 2021Updated 4 years ago
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆26Jul 28, 2022Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆28Feb 6, 2025Updated last year
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- ☆70Aug 19, 2023Updated 2 years ago
- This bartender version could handle arbitrary length of barcode☆32Jan 6, 2024Updated 2 years ago
- Contains sample scripts and code to be used with LabKey Server☆11Jan 3, 2025Updated last year
- Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique s…☆75Dec 28, 2025Updated last month
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆331Feb 3, 2026Updated last week
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 4 months ago
- ☆35Jul 15, 2016Updated 9 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 2 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Biomark Fluidigm qPCR data set: processing and analysis☆10Apr 8, 2024Updated last year
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 6 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Pytorch Implementation of Lightweight and robust representation of economic scales from satellite imagery.☆13Nov 21, 2019Updated 6 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆14Nov 22, 2022Updated 3 years ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 5 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- ☆11Feb 18, 2022Updated 3 years ago
- R scripts and data sets that can be used to reproduce the results presented in the paper "Bayesian additive regression trees with model t…☆10Dec 13, 2022Updated 3 years ago
- ☆27Feb 4, 2026Updated last week
- SODEN: A Scalable Continuous-Time Survival Model through Ordinary Differential Equation Networks☆14Mar 2, 2023Updated 2 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- ☆37Updated this week
- integrated RNA-seq Analysis Pipeline☆84Feb 6, 2019Updated 7 years ago
- Simple wrapper around docker-machine tool for creating and managing cloud instances across many providers☆10Sep 5, 2017Updated 8 years ago
- R Shiny web-app for integrated metabolic network analysis☆11Aug 11, 2022Updated 3 years ago
- Mixed Effect Machine Learning☆10Apr 16, 2020Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. epiR — Tools for the Analysis of Epidemiological Data☆10Dec 15, 2025Updated last month
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- ☆11Sep 6, 2021Updated 4 years ago