YichaoOU / HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
☆68Updated this week
Alternatives and similar repositories for HemTools:
Users that are interested in HemTools are comparing it to the libraries listed below
- ☆54Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆47Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 7 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆43Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆35Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆82Updated last week
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- HiC uniform processing pipeline☆58Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆45Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- A list of alternative splicing analysis resources☆42Updated 3 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆78Updated 7 months ago
- Tutorial Website☆56Updated 4 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆40Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆52Updated 3 weeks ago
- ☆48Updated 3 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆41Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- A small-RNA sequencing analysis pipeline☆79Updated 3 weeks ago
- release version☆51Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago