Alternatives and similar repositories for wormbase-pipeline

Users that are interested in wormbase-pipeline are comparing it to the libraries listed below

• Ensembl / ensembl-io
  File parsing and writing code for Ensembl
  ☆10Updated last week
• ncbi / magicblast
  ☆37Updated 3 months ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 9 months ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• dnanexus-rnd / DeepVariant-GLnexus-WDL
  WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
  ☆10Updated 6 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 9 years ago
• DCGenomics / DangerTrack
  ☆13Updated 8 years ago
• Oshlack / necklace
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆21Updated 5 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 6 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 4 years ago
• miRTop / mirtop
  command lines tool to annotate miRNAs with a standard mirna/isomir naming
  ☆18Updated 2 months ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆34Updated 9 months ago
• Bioconductor / KEGGREST
  Client-side REST access to KEGG
  ☆12Updated last month
• InscriptaLabs / BioCantor
  ☆22Updated last year
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 4 years ago
• dib-lab / kProcessor
  kProcessor: kmers processing framework.
  ☆11Updated last year
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆12Updated 4 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆57Updated 2 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• Xinglab / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆13Updated last year
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated 2 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 10 months ago
• shendurelab / MetaPhase
  The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)
  ☆17Updated 6 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 4 months ago
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆15Updated 2 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated 2 months ago