WormBase / wormbase-pipeline

Related projects ⓘ

Alternatives and complementary repositories for wormbase-pipeline

• Ensembl / ensembl-io
  File parsing and writing code for Ensembl
  ☆10Updated last week
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• InscriptaLabs / BioCantor
  ☆21Updated last year
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• mskilab-org / gGnome.js
  ☆26Updated last year
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆19Updated 3 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆32Updated last month
• s-andrews / BamQC
  Mapped QC analysis program
  ☆42Updated 6 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆32Updated 3 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• sbg / smart-variant-filtering
  ☆30Updated 3 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆21Updated 5 years ago
• ncbi / BAMscale
  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …
  ☆67Updated 2 years ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆25Updated 4 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆38Updated 2 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆39Updated 7 years ago
• ncbi / magicblast
  ☆35Updated last year
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 2 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆41Updated 5 years ago
• mghandi / gkmSVM
  gkmSVM R package
  ☆17Updated 6 years ago
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆26Updated 3 weeks ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 7 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• hammerlab / vcf-annotate-polyphen
  A tool to annotate human VCF files with PolyPhen2 effect measures
  ☆9Updated last year