francescojm / ADAMLinks
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
☆24Updated 6 years ago
Alternatives and similar repositories for ADAM
Users that are interested in ADAM are comparing it to the libraries listed below
Sorting:
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Explore the cancer relevance of your gene list☆52Updated last week
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆53Updated 2 years ago
- ☆55Updated 10 months ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated last month
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 3 years ago
- ☆55Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated 2 weeks ago
- Fast motif matching in R☆46Updated last year
- Clone identification from single-cell data☆61Updated 3 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Updated 6 years ago