Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
☆24Mar 29, 2019Updated 7 years ago
Alternatives and similar repositories for ADAM
Users that are interested in ADAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆55Apr 28, 2023Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 7 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 5 months ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Bayesian Multitask Multiple Kernel Learning☆18Mar 17, 2018Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆37Jul 5, 2021Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆29Jul 10, 2023Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- ☆13Sep 2, 2024Updated last year
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- Wormbase Build Pipeline☆22Jan 7, 2026Updated 5 months ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125May 21, 2026Updated last month
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated last year
- ☆15Jul 7, 2023Updated 2 years ago
- R package for high-throughput DNA shape predictions and feature encoding☆20Jul 1, 2021Updated 5 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- ☆62Aug 4, 2020Updated 5 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Nov 27, 2012Updated 13 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- ☆14Jun 11, 2020Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆14Nov 5, 2024Updated last year