yuelab / BUTLRTools
☆15Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for BUTLRTools
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Published methods☆15Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- HOT regions paper☆11Updated 5 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆15Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- A tool to assess the quality and distribution of genomic data☆16Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆16Updated 3 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- ☆14Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated 3 weeks ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago