yuelab / BUTLRToolsLinks
☆16Updated 8 years ago
Alternatives and similar repositories for BUTLRTools
Users that are interested in BUTLRTools are comparing it to the libraries listed below
Sorting:
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆20Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆23Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago