Tools for handling HiC and 5C data
☆24Feb 5, 2024Updated 2 years ago
Alternatives and similar repositories for hifive
Users that are interested in hifive are comparing it to the libraries listed below
Sorting:
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 4 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 2 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 7 years ago
- OLD REPOSITORY - Go to☆31Feb 6, 2018Updated 8 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Aug 28, 2015Updated 10 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Apr 12, 2019Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- ☆16Mar 16, 2017Updated 8 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- ☆29Apr 23, 2025Updated 10 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated last year
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 7 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 7 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Nov 12, 2025Updated 3 months ago
- A cool place to store your Hi-C☆231Feb 23, 2026Updated last week
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Normalizing Hi-C contact counts efficiently☆41May 21, 2025Updated 9 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- ☆10Dec 12, 2017Updated 8 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 2 months ago
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Jul 13, 2020Updated 5 years ago