aboyle / F-seqLinks
A Feature Density Estimator for High-Throughput Sequence Tags
☆22Updated 4 years ago
Alternatives and similar repositories for F-seq
Users that are interested in F-seq are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- ☆16Updated last year
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0