aboyle / F-seqLinks
A Feature Density Estimator for High-Throughput Sequence Tags
☆22Updated 4 years ago
Alternatives and similar repositories for F-seq
Users that are interested in F-seq are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆16Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- ☆26Updated 5 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year