A Feature Density Estimator for High-Throughput Sequence Tags
☆22May 25, 2021Updated 4 years ago
Alternatives and similar repositories for F-seq
Users that are interested in F-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- nucleosome calling using ATAC-seq☆111Dec 20, 2020Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 5 months ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 3 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 14 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- ☆11Dec 12, 2014Updated 11 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆22Jun 21, 2017Updated 8 years ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated 9 months ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- Fast and accurate sequence demultiplexing☆30Mar 18, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 4 years ago
- A lightweight start point of shell configuration☆24Apr 19, 2023Updated 3 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- 基于 Flask 搭建的个人博客☆10Sep 16, 2022Updated 3 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- All-in-one analysis pipeline☆41Sep 3, 2024Updated last year