A Feature Density Estimator for High-Throughput Sequence Tags
☆22May 25, 2021Updated 4 years ago
Alternatives and similar repositories for F-seq
Users that are interested in F-seq are comparing it to the libraries listed below
Sorting:
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Mar 6, 2026Updated 2 weeks ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Nov 12, 2024Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 3 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Jun 21, 2017Updated 8 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated 7 months ago
- R package providing basic command line optional argument parsing☆12Updated this week
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 3 years ago
- Fast and accurate sequence demultiplexing☆29Feb 7, 2026Updated last month
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 3 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- ☆10Apr 16, 2020Updated 5 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 2 months ago