aboyle / F-seq
A Feature Density Estimator for High-Throughput Sequence Tags
☆23Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for F-seq
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- chia pet analysis software☆25Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Exon-exon splice junctions across SRA☆39Updated 3 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- ☆23Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- RNA-Seq pipeline☆34Updated 9 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 8 years ago
- ☆15Updated 10 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago