aboyle / F-seq
A Feature Density Estimator for High-Throughput Sequence Tags
☆23Updated 3 years ago
Alternatives and similar repositories for F-seq:
Users that are interested in F-seq are comparing it to the libraries listed below
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- Useful tools for working with Salmon output☆36Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- ☆20Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆23Updated this week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- RNA-Seq pipeline☆34Updated 9 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- Exon-exon splice junctions across SRA☆39Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- ☆9Updated 8 years ago
- Toolkit for benchmarking fusion transcript predictions☆18Updated 5 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- ☆24Updated 4 years ago