TheJacksonLaboratory / basic-browserLinks
☆11Updated 4 years ago
Alternatives and similar repositories for basic-browser
Users that are interested in basic-browser are comparing it to the libraries listed below
Sorting:
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- ☆24Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆50Updated 6 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆27Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- an efficient Hi-C data processing pipeline☆17Updated last year
- HiC uniform processing pipeline☆60Updated last year
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 4 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- ☆58Updated 3 years ago
- release version☆54Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆8Updated 5 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 8 months ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆50Updated 5 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Some NGS workflow created by snakemake☆13Updated 5 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- ☆32Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago