Alternatives and similar repositories for basic-browser

Users that are interested in basic-browser are comparing it to the libraries listed below

• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• TheJacksonLaboratory / ChIA-PIPE
  ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
  ☆29Updated 4 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 3 months ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆68Updated 3 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆39Updated last month
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆61Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 4 years ago
• dozmorovlab / TADCompare
  Package for analysis and characterization of differential TADs
  ☆26Updated 3 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆44Updated 7 years ago
• vaquerizaslab / fanc
  FAN-C: Framework for the ANalysis of C-like data
  ☆120Updated last year
• wyang17 / SQuIRE
  Software for Quantifying Interspersed Repeat Expression
  ☆63Updated 3 years ago
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆45Updated last week
• XiaoTaoWang / NeoLoopFinder
  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
  ☆73Updated 2 years ago
• XiaoTaoWang / HiC_pipeline
  An easy-to-use Hi-C data processing software supporting distributed computation.
  ☆62Updated last year
• NYU-BFX / hic-bench
  A set of pipelines for Hi-C and ChIP-Seq analysis.
  ☆48Updated last year
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆29Updated 8 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆19Updated 5 years ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆76Updated last year
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆43Updated last week
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆50Updated 2 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• ren-lab / hic-pipeline
  ☆24Updated 4 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆59Updated 2 years ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆71Updated 11 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆46Updated 7 months ago
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆110Updated last year