robinweide / GENOVA

Related projects: ⓘ

• snystrom / memes
  An R interface to the MEME Suite
  ☆43Updated 4 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆84Updated last month
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆64Updated 2 weeks ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆51Updated 3 years ago
• ParkerLab / ataqv
  A toolkit for QC and visualization of ATAC-seq results.
  ☆64Updated last year
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆28Updated 5 years ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆71Updated 10 months ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆52Updated 2 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated 2 years ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆27Updated 4 months ago
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆41Updated last year
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆29Updated 5 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆44Updated last week
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆53Updated 4 years ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆77Updated 2 months ago
• parklab / ShatterSeek
  ☆65Updated last year
• Henikoff / Cut-and-Run
  ☆29Updated 6 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆130Updated 3 weeks ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆52Updated last year
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆98Updated last month
• RamRS / biostar-mod-templates
  Moderator Templates for https://www.biostars.org/
  ☆11Updated 3 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆56Updated 8 months ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆25Updated 9 months ago
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆58Updated last year
• BleekerLab / snakemake_rnaseq
  A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…
  ☆12Updated last year
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆20Updated 6 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆33Updated last week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆103Updated 2 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆49Updated 2 years ago