Total copy number inference from single-cell RNA and ATAC sequing with cell clustering
☆11Oct 31, 2024Updated last year
Alternatives and similar repositories for rcongas
Users that are interested in rcongas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Reverse engineering my vacuum robot☆11Dec 11, 2020Updated 5 years ago
- Custom PDF report layouts to export ggplot2 visualizations☆11Mar 1, 2019Updated 7 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 months ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated last year
- Clinical oncology tumor board decision support system made by the Decider project.☆13Jun 7, 2025Updated 9 months ago
- ☆18Oct 22, 2024Updated last year
- ☆15Dec 29, 2025Updated 3 months ago
- Git repo for CONIPHER tree building☆26Mar 20, 2025Updated last year
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 2 months ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Mar 20, 2026Updated last week
- OncoPrint visualization☆23Jun 8, 2022Updated 3 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 3 months ago
- ☆36Jun 4, 2024Updated last year
- ☆14Dec 18, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code for RNA-seq gene coexpression analysis☆10Dec 23, 2021Updated 4 years ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- SPA: Efficient User-Preference Alignment against Uncertainty in Medical Image Segmentation (ICCV 2025)☆15Sep 26, 2025Updated 6 months ago
- ☆13Feb 26, 2024Updated 2 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- Python wrapper for Caterva. Still preliminary.☆21Apr 10, 2023Updated 2 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Nov 5, 2025Updated 4 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- ☆18Sep 23, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Apr 20, 2023Updated 2 years ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Mar 9, 2026Updated 3 weeks ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Sep 19, 2019Updated 6 years ago
- ☆11May 26, 2023Updated 2 years ago
- ☆19Nov 30, 2021Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago