Total copy number inference from single-cell RNA and ATAC sequing with cell clustering
☆12Oct 31, 2024Updated 2 years ago
Alternatives and similar repositories for rcongas
Users that are interested in rcongas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Get a desktop alert when a nearby car is available☆13Sep 24, 2025Updated last year
- Reverse engineering my vacuum robot☆11Dec 11, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- ☆28Oct 27, 2026Updated last week
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆12Aug 15, 2025Updated last year
- Paired Insertion Counting for snATAC-seq data☆20Aug 17, 2026Updated 2 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- Custom PDF report layouts to export ggplot2 visualizations☆11Mar 1, 2019Updated 7 years ago
- Implementation of MaSigPro for scRNA-Seq Data.☆20Oct 29, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Sep 27, 2022Updated 4 years ago
- Single Cell Genomes with Allele Specificity☆14Updated this week
- ☆14Jun 16, 2025Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆14Oct 3, 2025Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆29Jun 24, 2025Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 11 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- Interpretable Analysis of Histological WSIs☆20Oct 20, 2026Updated 2 weeks ago
- R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of l…☆12Oct 26, 2025Updated last year
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 11 months ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Oct 18, 2024Updated 2 years ago
- ☆18Oct 22, 2024Updated 2 years ago
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- ☆15Sep 23, 2025Updated last year
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 4 months ago
- A high-performance R package for single-cell genomics☆22Oct 5, 2026Updated last month
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year