apierleoni / BioGraPy
Biological Graphic tool in Python
☆34Updated 4 years ago
Related projects: ⓘ
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 3 months ago
- ☆9Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated last month
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 6 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆28Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆31Updated 10 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Validate FastQ Files☆36Updated 5 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 5 years ago
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 13 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago