JialiUMassWengLab / laSVLinks
laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datasets
☆12Updated 8 years ago
Alternatives and similar repositories for laSV
Users that are interested in laSV are comparing it to the libraries listed below
Sorting:
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Hemang Parikh☆11Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- gvcf aggregation tool☆12Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- ☆34Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago