JialiUMassWengLab / laSV
laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datasets
☆11Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for laSV
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Hemang Parikh☆11Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Copy number estimation of highly duplicated sequences☆10Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- gvcf aggregation tool☆12Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- ☆13Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆12Updated last week
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- ☆12Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- A tutorial for learning de novo assembly☆33Updated 12 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Archived version 1.0.2☆16Updated 4 years ago