JialiUMassWengLab / laSV
laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datasets
☆12Updated 8 years ago
Alternatives and similar repositories for laSV:
Users that are interested in laSV are comparing it to the libraries listed below
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Hemang Parikh☆11Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆35Updated 5 years ago
- ☆21Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Population-wide Deletion Calling☆35Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Code for building and testing variant ranking strategies☆16Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago