refresh-bio / GTC
GenoTypes Compressor
☆15Updated 2 years ago
Alternatives and similar repositories for GTC:
Users that are interested in GTC are comparing it to the libraries listed below
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- vcf file manipulation☆21Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆29Updated 4 years ago
- variant integration methods for the 1000 Genomes Project☆21Updated 7 years ago
- gvcf aggregation tool☆12Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆21Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- SEQSpark documentation☆18Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago