open2c / open2c_examplesLinks
☆17Updated last year
Alternatives and similar repositories for open2c_examples
Users that are interested in open2c_examples are comparing it to the libraries listed below
Sorting:
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Statistically Significant loops from HiChIP data☆44Updated last year
- Tutorial Website☆59Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 7 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- ☆19Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- ☆17Updated 6 years ago
- ☆23Updated last year