open2c / open2c_examples
☆17Updated last year
Alternatives and similar repositories for open2c_examples:
Users that are interested in open2c_examples are comparing it to the libraries listed below
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Cooler demo using a Jupyter notebook Binder☆17Updated 4 years ago
- ☆18Updated last year
- Chromatin States Map in mouse embryonic stem cell☆15Updated 6 years ago
- ☆16Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Statistically Significant loops from HiChIP data☆40Updated 11 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆27Updated 3 years ago
- ☆30Updated 2 months ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- ☆24Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- ☆21Updated last year
- ☆17Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆11Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 5 months ago
- Mapping pipeline for snmC-seq based technologies.☆19Updated last year
- Predicting regulatory DNA elements based on epigenomic signatures☆28Updated 9 months ago