open2c / open2c_examples

Related projects: ⓘ

• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆43Updated 5 years ago
• kundajelab / ataqc
  ☆17Updated 5 years ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆58Updated 8 months ago
• open2c / cooler-binder
  Cooler demo using a Jupyter notebook Binder
  ☆15Updated 3 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆38Updated 5 months ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆36Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆51Updated 3 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆27Updated 3 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated last year
• ijuric / MAPS
  ☆18Updated last year
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆37Updated 2 years ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆19Updated 4 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆42Updated 3 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆20Updated last month
• raphael-group / decifer
  DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…
  ☆20Updated 3 months ago
• mbassalbioinformatics / CnRAP
  Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
  ☆17Updated 3 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• hyulab / PINTS
  ☆12Updated last week
• tariks / peakachu
  Genome-wide contact analysis using sklearn
  ☆57Updated 5 months ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆35Updated 7 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆20Updated last year
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆34Updated 9 years ago
• JinLabBioinfo / HiCorr
  HiCorr: a Hi-C data bias-correction pipeline
  ☆27Updated last year
• rhysnewell / ChIP-R
  Assessing the reproducibility of proccessed ChIP-seq peaks
  ☆9Updated 3 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆22Updated last year
• WRui / Post_Implantation
  ☆26Updated 3 years ago