Alternatives and similar repositories for open2c_examples:

Users that are interested in open2c_examples are comparing it to the libraries listed below

• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆46Updated 5 years ago
• ijuric / MAPS
  ☆18Updated last year
• open2c / cooler-binder
  Cooler demo using a Jupyter notebook Binder
  ☆16Updated 4 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆37Updated 3 years ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆65Updated last year
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆34Updated 9 years ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆36Updated last year
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• zhongmicai / Hic_tools_collection
  ☆10Updated 5 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆40Updated 9 months ago
• wenweixiong / MARVEL
  ☆44Updated 5 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆25Updated 2 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆16Updated 3 months ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆23Updated 3 weeks ago
• aryarm / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 2 years ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆36Updated last year
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆25Updated 2 years ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 5 years ago
• linlabbcm / rose2
  ☆13Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 6 months ago
• rhysnewell / ChIP-R
  Assessing the reproducibility of proccessed ChIP-seq peaks
  ☆11Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆21Updated last year
• tariks / peakachu
  Genome-wide contact analysis using sklearn
  ☆60Updated 10 months ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated last year