open2c / open2c_examplesLinks
☆17Updated last year
Alternatives and similar repositories for open2c_examples
Users that are interested in open2c_examples are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- Chromatin States Map in mouse embryonic stem cell☆17Updated 7 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆22Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Genome-wide contact analysis using sklearn☆70Updated last year
- Tutorial Website☆60Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆14Updated 7 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 10 months ago
- ☆19Updated 2 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 weeks ago
- ☆24Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆25Updated 4 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆39Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year