SilentGene / Bio-py
Some useful python scripts for biologists
☆32Updated 2 months ago
Alternatives and similar repositories for Bio-py:
Users that are interested in Bio-py are comparing it to the libraries listed below
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- ☆32Updated last year
- ☆35Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Scripts and libraries for Environmental Genomics☆37Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Protein Alignment and Detection Interface☆61Updated 10 months ago
- Course material for the metagenomics course☆43Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆41Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated 2 years ago
- ☆27Updated 4 years ago
- StrainFinder☆27Updated 6 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆37Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- A toolkit for prokaryotic comparative genomics☆40Updated 3 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 8 months ago
- ☆23Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago