SilentGene / Bio-pyLinks
Some useful python scripts for biologists
☆32Updated 10 months ago
Alternatives and similar repositories for Bio-py
Users that are interested in Bio-py are comparing it to the libraries listed below
Sorting:
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- ☆21Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆24Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ☆40Updated 4 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 8 months ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- ☆31Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- ☆15Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 7 months ago
- collection of bioinformatic scripts☆31Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆18Updated 3 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Protein Alignment and Detection Interface☆60Updated last year