Alternatives and similar repositories for Bio-py

Users that are interested in Bio-py are comparing it to the libraries listed below

• biovcnet / topic-functional-annotation
  A repository for the lessons and notebooks used for Binder tutorials
  ☆14Updated 5 years ago
• zjshi / snv_analysis_almeida2019
  ☆21Updated 5 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 4 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 4 months ago
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 4 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆27Updated last year
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated last week
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated 2 years ago
• josephhughes / Sequence-manipulation
  A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
  ☆30Updated 2 years ago
• chiulab / SURPI-plus-dist
  This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…
  ☆42Updated 5 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated last month
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 7 months ago
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆20Updated 5 years ago
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• sepsis-omics / tutorials
  Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
  ☆25Updated last year
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 4 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆46Updated 2 years ago
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• segalab / SGVFinder
  ☆32Updated 2 years ago
• EnvGen / DEGEPRIME
  A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
  ☆32Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 4 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 9 months ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year