Linwei-Wu / Global-bacterial-diversity-in-WWTPs
☆22Updated 6 years ago
Alternatives and similar repositories for Global-bacterial-diversity-in-WWTPs:
Users that are interested in Global-bacterial-diversity-in-WWTPs are comparing it to the libraries listed below
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- dada2 formatted nifH database☆11Updated 10 months ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- ☆13Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated last month
- Utilities for community ecology analysis☆18Updated 4 years ago
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- Integrated Network Analysis Pipeline☆15Updated 3 months ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆47Updated 3 years ago
- ☆12Updated 3 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 5 years ago
- ☆8Updated 5 years ago
- ☆49Updated 4 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆43Updated 4 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆12Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year
- ☆35Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 3 months ago
- ☆12Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- ☆71Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 4 years ago
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Normalized Stochasticity Ratio in community assembly☆24Updated 4 months ago