Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
☆25Jun 11, 2024Updated 2 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🍗⭐ In silico Legionella pneumophila Sequence Based Typing☆13Feb 8, 2026Updated 8 months ago
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.☆10Apr 9, 2019Updated 7 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- ☆10Jun 9, 2025Updated last year
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Apr 6, 2022Updated 4 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 8 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Python package for common tasks in bioinformatic.☆11Sep 24, 2025Updated last year
- Web interface for Kaptive, the tool for in silico serotyping☆11Aug 7, 2026Updated 2 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- ☆25Feb 21, 2017Updated 9 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An interactive radial tree for functional hierarchies and omics data visualization☆25Mar 27, 2026Updated 7 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆39Apr 24, 2025Updated last year
- Opinionated viral metagenomics workflow☆20Oct 8, 2026Updated 3 weeks ago
- Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017☆12Dec 27, 2017Updated 8 years ago
- ☆29Aug 6, 2026Updated 2 months ago
- RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes☆14Oct 14, 2024Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆41Aug 7, 2026Updated 2 months ago
- Download refseq-genomic data and prepare it for Kraken☆11Jan 20, 2017Updated 9 years ago
- Your dedicated research inspiration engine. An agent framework for generating high-quality, structured research ideas.☆13Mar 2, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Oct 26, 2026Updated last week
- ☆16May 21, 2026Updated 5 months ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Various bioinformatics tutorials☆61Sep 22, 2023Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- A bioinformatics toolset for multiomic analysis☆22Aug 17, 2026Updated 2 months ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- A phylogenetic profile analysis tool☆38Sep 14, 2026Updated last month
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Updated this week
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus☆12May 21, 2025Updated last year