skoblov-lab / spliceai-reforged
A GPU-friendly implementation of SpliceAI
☆11Updated 2 years ago
Alternatives and similar repositories for spliceai-reforged:
Users that are interested in spliceai-reforged are comparing it to the libraries listed below
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆25Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆43Updated 3 months ago
- Bidirectional WFA (Paper)☆46Updated 10 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- HiFi-based caller for highly similar paralogous genes☆38Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆52Updated 9 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆42Updated last week
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆48Updated last month
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 9 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆40Updated last month
- ☆45Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- ☆37Updated last month
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆35Updated 3 months ago
- (WIP) best-practices workflow for rare disease☆60Updated 8 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Distributed and cloud computing framework for vg☆23Updated 4 months ago
- ☆30Updated 2 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 6 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆15Updated 10 months ago
- ☆18Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 weeks ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 11 months ago