This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interaction between environmental exposure and respiratory health'.
☆13Apr 27, 2024Updated last year
Alternatives and similar repositories for population_airway_microbiome
Users that are interested in population_airway_microbiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- This is an R package for element cycle analysis using metagenomic data.☆43Feb 2, 2026Updated last month
- Papers of deep learning for trading☆12Jun 4, 2020Updated 5 years ago
- Tools for Unmixing Spectral Flow Cytometry Data☆24Updated this week
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Global, regional, and national prevalence and mortality burden of sickle cell disease among children and adults, 2000 - 2021: a systemati…☆15May 19, 2023Updated 2 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆87Feb 21, 2026Updated last month
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 2 months ago
- Metabolic Syndrome Severity Calculator☆13Jan 3, 2023Updated 3 years ago
- ☆20Jan 27, 2021Updated 5 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Causal mediation and interaction analysis - 4way decomposition - Rscript☆10Oct 3, 2017Updated 8 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Jun 24, 2021Updated 4 years ago
- Format of GWAS summary statistics.☆12Jul 31, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- Reanalyze of GSE111527 scRNA-seq data☆20May 30, 2020Updated 5 years ago
- Data and analysis for the Splatter paper☆30Dec 4, 2017Updated 8 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- A curated list of R used in ecology and evolution☆13Aug 9, 2021Updated 4 years ago
- ☆31Nov 3, 2025Updated 4 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Stata command for the 4-way decomposition using parametric regression models☆17Sep 30, 2021Updated 4 years ago
- 网络爬虫集合☆11Feb 26, 2021Updated 5 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆24Feb 4, 2026Updated last month
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 5 months ago
- Global, regional, and national burden of epilepsy, 1990–2021: a systematic analysis for the Global Burden of Disease Study 2021☆29Sep 22, 2023Updated 2 years ago
- ☆15May 22, 2025Updated 10 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆18Nov 15, 2012Updated 13 years ago
- Code for implementing Mendelian randomization investigations☆20Nov 9, 2015Updated 10 years ago
- global burden of disease☆38Aug 8, 2023Updated 2 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Updated this week