Alternatives and similar repositories for population_airway_microbiome

Users that are interested in population_airway_microbiome are comparing it to the libraries listed below

• kellylab / viral-protein-function-plm

  View on GitHub
  Viral protein family functional prediction using protein language models
  ☆21Jan 6, 2026Updated last month
• GRONINGEN-MICROBIOME-CENTRE / DMP

  View on GitHub
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Jun 24, 2021Updated 4 years ago
• wangzlab / COPD_multiomics

  View on GitHub
  This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…
  ☆33Aug 16, 2022Updated 3 years ago
• Asa12138 / ReporterScore

  View on GitHub
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆86Jun 19, 2025Updated 7 months ago
• DrCytometer / AutoSpectral

  View on GitHub
  Tools for Unmixing Spectral Flow Cytometry Data
  ☆18Updated this week
• YunyunGao374 / ProteinCell2023MicrobiomeReview

  View on GitHub
  MicrobiomeReview
  ☆11Jun 6, 2023Updated 2 years ago
• guanxiangliang / liang2019

  View on GitHub
  Step-wise assembly of the neonatal virome modulated by breast feeding.
  ☆11Aug 20, 2021Updated 4 years ago
• Unalmut / 4way-decomposition

  View on GitHub
  Causal mediation and interaction analysis - 4way decomposition - Rscript
  ☆10Oct 3, 2017Updated 8 years ago
• MetSCalc / metscalc

  View on GitHub
  Metabolic Syndrome Severity Calculator
  ☆13Jan 3, 2023Updated 3 years ago
• Rockyzsu / CrawlMan

  View on GitHub
  网络爬虫集合
  ☆11Feb 26, 2021Updated 4 years ago
• tjcadd2020 / xMarkerFinder

  View on GitHub
  Microbial marker identification from cross-cohort datasets
  ☆14May 15, 2024Updated last year
• ChiLiubio / meconetcomp

  View on GitHub
  Compare microbial co-occurrence networks based on the trans_network class of microeco package
  ☆12Updated this week
• metagentools / GraphBin2

  View on GitHub
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Oct 24, 2025Updated 3 months ago
• jinghuazhao / SUMSTATS

  View on GitHub
  Format of GWAS summary statistics.
  ☆12Jul 31, 2024Updated last year
• chakib401 / SAGSC

  View on GitHub
  [AAAI 2023] Scalable Attributed-Graph Subspace Clustering
  ☆12Jul 16, 2023Updated 2 years ago
• shiraz-shah / VFCs

  View on GitHub
  Code for de novo discovery of viral families in virome data
  ☆16Jun 20, 2024Updated last year
• niaid / virome-pipeline

  View on GitHub
  This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
  ☆13Feb 6, 2026Updated last week
• RChGO / VMGC

  View on GitHub
  vaginal microbiota
  ☆12Jan 21, 2025Updated last year
• leylabmpi / resmico

  View on GitHub
  Identifying misassemblies via deep learning
  ☆11May 1, 2024Updated last year
• ChongWuLab / SUMMIT

  View on GitHub
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Jun 27, 2023Updated 2 years ago
• helixcn / awsome-R-ecology-evolution

  View on GitHub
  A curated list of R used in ecology and evolution
  ☆13Aug 9, 2021Updated 4 years ago
• soulmachine / awesome-deep-trading

  View on GitHub
  Papers of deep learning for trading
  ☆12Jun 4, 2020Updated 5 years ago
• Vini2 / reneo

  View on GitHub
  🦠🧬 Unraveling Viral Genomes from Metagenomes
  ☆10Oct 3, 2025Updated 4 months ago
• sjaenick / pprodigal

  View on GitHub
  Python3 wrapper for parallelized gene prediction using Prodigal
  ☆11Mar 3, 2023Updated 2 years ago
• viralInformatics / VIGA

  View on GitHub
  ☆15May 22, 2025Updated 8 months ago
• simonerampelli / viromescan

  View on GitHub
  ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…
  ☆13Feb 13, 2023Updated 3 years ago
• dyxstat / MetaCC

  View on GitHub
  MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
  ☆11Mar 8, 2025Updated 11 months ago
• WallauBioinfo / EEfinder

  View on GitHub
  ☆10Mar 25, 2025Updated 10 months ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes

  View on GitHub
  ☆14Jun 24, 2019Updated 6 years ago
• cerebis / qc3C

  View on GitHub
  Reference-free quality assessment for Hi-C sequencing data
  ☆13Apr 30, 2024Updated last year
• syan1992 / iNGNN-DTI

  View on GitHub
  ☆13Jul 24, 2023Updated 2 years ago
• krishnanlab / GenePlexus

  View on GitHub
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Nov 3, 2021Updated 4 years ago
• yuezhengfu / CNPS.cycle

  View on GitHub
  This is an R package for element cycle analysis using metagenomic data.
  ☆41Feb 2, 2026Updated 2 weeks ago
• wangjuan001 / hicplus

  View on GitHub
  ☆13Jul 21, 2021Updated 4 years ago
• liu-qilong / Yin-and-Yang-Theme

  View on GitHub
  Adapt Yin and Yang theme to Obsidian 1.x
  ☆13Feb 7, 2023Updated 3 years ago
• ihmeuw / sickle_cell_disease_gbd_2021

  View on GitHub
  Global, regional, and national prevalence and mortality burden of sickle cell disease among children and adults, 2000 - 2021: a systemati…
  ☆14May 19, 2023Updated 2 years ago
• microbiome / course_2021_radboud

  View on GitHub
  Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/
  ☆12Aug 12, 2021Updated 4 years ago
• rnajena / bertax_training

  View on GitHub
  Training scripts for BERTax
  ☆12Jun 12, 2024Updated last year
• anddis / med4way

  View on GitHub
  Stata command for the 4-way decomposition using parametric regression models
  ☆15Sep 30, 2021Updated 4 years ago