A predictor of enzyme optimal temperature
☆13Mar 13, 2025Updated 11 months ago
Alternatives and similar repositories for Seq2Topt
Users that are interested in Seq2Topt are comparing it to the libraries listed below
Sorting:
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Jan 16, 2026Updated last month
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆17Aug 12, 2025Updated 6 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Updated this week
- ☆35Jun 17, 2025Updated 8 months ago
- Dual-core Multi-agent Learning Framework For EC Number Prediction☆21Nov 5, 2024Updated last year
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- DeepECtransformer☆29Oct 20, 2023Updated 2 years ago
- ☆28Aug 29, 2024Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 3 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- ☆32Jan 27, 2026Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 3 months ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆18Oct 8, 2025Updated 4 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Jan 5, 2026Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Feb 25, 2023Updated 3 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆96Aug 11, 2025Updated 6 months ago
- ☆16Jan 14, 2026Updated last month
- ☆13Nov 13, 2023Updated 2 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 4 months ago
- ☆14Oct 27, 2025Updated 4 months ago
- ☆10Feb 21, 2020Updated 6 years ago
- Easy353 is a tool for recovering Angiosperms353 gene set.☆11Jul 29, 2025Updated 7 months ago
- An ontology database for crops' traits with their variables☆21Apr 9, 2025Updated 10 months ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆10Nov 24, 2023Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 10 months ago
- Python framework for doing ancestral sequence reconstruction☆44Jul 8, 2024Updated last year
- Machine learning prediction of enzyme optimum pH☆50Apr 29, 2025Updated 10 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 6 months ago