ablab / npdtoolsLinks
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
☆28Updated 3 years ago
Alternatives and similar repositories for npdtools
Users that are interested in npdtools are comparing it to the libraries listed below
Sorting:
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- ☆20Updated 2 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated 3 weeks ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- ☆11Updated last year
- A Python interface to proteomics data repositories☆35Updated 2 months ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆46Updated 3 months ago
- ☆14Updated 2 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆54Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Metabolome Annotation Workflow☆25Updated last year
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- Python interface to amino acid properties and IEDB☆57Updated 10 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆21Updated last month
- ☆64Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A BioJS viewer for protein sequence features☆51Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆20Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆48Updated 3 weeks ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆25Updated 3 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated this week
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆22Updated this week
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆89Updated last year