Alternatives and similar repositories for npdtools

Users that are interested in npdtools are comparing it to the libraries listed below

• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• madeleineernst / pyMolNetEnhancer
  ☆21Updated 2 years ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• fermo-metabolomics / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆32Updated 3 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 4 months ago
• computational-chemical-biology / ChemWalker
  ☆11Updated last year
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆21Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆49Updated 5 months ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆21Updated 3 weeks ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• secimTools / SECIMTools
  A set of metabolomics tools for use in Galaxy
  ☆11Updated 3 years ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆55Updated 2 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆42Updated last year
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 4 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆48Updated 2 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago