dnbaker / sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
☆153Updated 6 months ago
Alternatives and similar repositories for sketch:
Users that are interested in sketch are comparing it to the libraries listed below
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- Succinct Data Structure Library 3.0☆94Updated 5 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆104Updated 10 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆85Updated 4 months ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆43Updated 5 months ago
- A General-Purpose Counting Filter: Counting Quotient Filter☆127Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆61Updated last year
- Prefix Filter: Practically and Theoretically Better Than Bloom.☆48Updated 2 years ago
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆48Updated 5 years ago
- Dynamic succinct/compressed data structures☆112Updated 8 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated 11 months ago
- Compact Data Structures Library☆124Updated 10 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆63Updated 8 months ago
- Paper about the estimation of cardinalities from HyperLogLog sketches☆61Updated 3 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- Succinct Data Structure Library☆105Updated 11 years ago
- Relative data structures based on the BWT☆12Updated 6 years ago
- BWT-based index for graphs☆70Updated 3 months ago
- Educational implementation of BWT and FM-index☆57Updated 6 years ago
- High-speed Bloom filters and taffy filters for C, C++, and Java☆35Updated last year
- TileDB☆79Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆208Updated 10 months ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆42Updated 4 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆43Updated 3 years ago
- C++ Implementation of Zip Trees☆14Updated 2 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- compressed, queryable variation graphs☆11Updated 9 years ago
- C++ Library implementing Compressed String Dictionaries☆46Updated 2 years ago