common-workflow-language / cwljavaLinks
Java SDK for the Common Workflow Language standards
☆13Updated this week
Alternatives and similar repositories for cwljava
Users that are interested in cwljava are comparing it to the libraries listed below
Sorting:
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆20Updated 2 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- An app store for scientific workflows, tools, notebooks, and services☆127Updated last week
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆96Updated last week
- Registration of Galaxy Tools in Elixir☆12Updated 6 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 8 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated this week
- Workflow Execution Service Backend☆18Updated last month
- EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…☆123Updated 2 months ago
- A web application to view and share Common Workflow Language workflows☆46Updated this week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Framework for testing CWL tools and workflows☆17Updated this week
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆10Updated 3 weeks ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated 6 months ago
- Introduction to Workflows with Common Workflow Language☆11Updated last year
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆23Updated 4 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 9 months ago
- Monarch web application and API☆42Updated 5 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 5 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- GA4GH Variation Representation Python Implementation☆57Updated this week
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated last week
- Python utilities for CWL☆39Updated this week
- A Python library for interacting with the Galaxy API☆93Updated last month
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆104Updated 2 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- Collect of SO Ontologies☆100Updated last week
- GA4GH Beacon specification.☆32Updated 2 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆79Updated 3 months ago