Java SDK for the Common Workflow Language standards
☆16Aug 27, 2026Updated this week
Alternatives and similar repositories for cwljava
Users that are interested in cwljava are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 9 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 13, 2026Updated 4 months ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- Mirror of Apache Taverna Language (incubating)☆22Apr 16, 2023Updated 3 years ago
- FDA High-performance Integrated Virtual Environment (HIVE)☆41Jul 24, 2026Updated last month
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Patterns commonly encountered when writing CWL workflows☆26Mar 30, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆17Sep 24, 2013Updated 12 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 3 months ago
- Python utilities for CWL☆43Updated this week
- Typescript data model for Common Workflow Language☆52Mar 3, 2023Updated 3 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Playing with the API for ClinicalTrials.gov and LillyCOI☆14Jul 28, 2014Updated 12 years ago
- A language server for Common Workflow Language☆64Dec 6, 2023Updated 2 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Mirror of Apache Taverna Engine (incubating)☆17Apr 16, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deprecated☆101Aug 12, 2019Updated 7 years ago
- Profile for provenance research object of a CWL workflow run☆20Dec 20, 2022Updated 3 years ago
- BitSeq code☆16Jun 21, 2021Updated 5 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 8 years ago
- owlapitools - a set of independent add-ons for OWL API☆16Oct 27, 2020Updated 5 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- StreamFlow Workflow Manager☆65Updated this week
- The overarching project of Java code related to the Open Provenance specifications.☆25Apr 18, 2011Updated 15 years ago
- Job Manager API and UI for interacting with asynchronous batch jobs and workflows.☆27Aug 12, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 13 years ago
- Workflow Execution Service Backend☆21Updated this week
- Semantic Annotations for Linked Avro Data☆86Updated this week
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Apr 13, 2026Updated 4 months ago
- Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge☆15Dec 10, 2015Updated 10 years ago
- Curated collection of open-source bioinformatics tools☆27Feb 5, 2019Updated 7 years ago
- High-reproducibility CWL runner powered by Guix☆24Updated this week