Alternatives and similar repositories for cwljava:

Users that are interested in cwljava are comparing it to the libraries listed below

• common-workflow-language / cwltest
  Framework for testing CWL tools and workflows
  ☆17Updated 2 weeks ago
• sapporo-wes / sapporo-service
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆22Updated 2 months ago
• umccr / cwl-ica
  A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
  ☆9Updated this week
• common-workflow-language / cwlviewer
  A web application to view and share Common Workflow Language workflows
  ☆46Updated this week
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆30Updated last week
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 4 months ago
• Consonance / consonance
  Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
  ☆14Updated 6 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 4 years ago
• common-workflow-language / cwl-website
  www.commonwl.org
  ☆10Updated 2 weeks ago
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated last week
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 8 months ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆125Updated this week
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 3 weeks ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆67Updated last week
• C3BI-pasteur-fr / ReGaTE
  Registration of Galaxy Tools in Elixir
  ☆12Updated 6 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• broadinstitute / firecloud-ui
  FireCloud user interface for web browsers.
  ☆19Updated 2 months ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• inab / WfExS-backend
  Workflow Execution Service Backend
  ☆18Updated this week
• ohsu-comp-bio / cwl-tes
  cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
  ☆18Updated 2 years ago
• sapporo-wes / sapporo
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆19Updated 2 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆31Updated 5 months ago
• ga4gh-discovery / data-connect
  Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.
  ☆24Updated last year
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 4 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆53Updated this week