common-workflow-language / cwljava

Related projects ⓘ

Alternatives and complementary repositories for cwljava

• common-workflow-language / cwlviewer
  A web application to view and share Common Workflow Language workflows
  ☆45Updated this week
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
  ☆29Updated this week
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 2 years ago
• sapporo-wes / sapporo-service
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆21Updated 3 weeks ago
• common-workflow-language / cwltest
  Framework for testing CWL tools and workflows
  ☆17Updated 2 weeks ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆26Updated this week
• C3BI-pasteur-fr / ReGaTE
  Registration of Galaxy Tools in Elixir
  ☆12Updated 5 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 3 years ago
• common-workflow-language / cwl-website
  www.commonwl.org
  ☆10Updated last week
• sapporo-wes / sapporo
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆19Updated 2 years ago
• broadinstitute / barclay
  Command line argument parser and online documentation generation utilities for java command line programs.
  ☆9Updated last week
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• monarch-initiative / monarch-disease-ontology-RETIRED
  THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
  ☆17Updated 3 years ago
• OBF / FALDO
  Feature Annotation Location Description Ontology
  ☆34Updated 4 years ago
• inab / WfExS-backend
  Workflow Execution Service Backend
  ☆17Updated 2 weeks ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 3 years ago
• bio-tools / ToolDog
  Generating tool descriptors from bio.tools
  ☆9Updated 6 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• DataBiosphere / job-manager
  Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
  ☆26Updated 4 months ago
• biojs / biojs2galaxy
  A fast tool to convert BioJS components into Galaxy visualization plugins.
  ☆14Updated 4 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆26Updated this week
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated 4 months ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 4 months ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 9 years ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated last year
• monarch-initiative / owlsim-v3
  Ontology Based Profile Matching
  ☆17Updated 2 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆120Updated this week
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆60Updated last month
• NCI-GDC / gdc-dnaseq-cwl
  CWL for GDC DNASeq workflows
  ☆21Updated 3 months ago