☆36Sep 6, 2017Updated 8 years ago
Alternatives and similar repositories for TCGA
Users that are interested in TCGA are comparing it to the libraries listed below
Sorting:
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆12Sep 21, 2017Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Jul 20, 2019Updated 6 years ago
- TCGA data acquisition and processing for Project Cognoma☆22Apr 19, 2018Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Readme☆10Mar 15, 2020Updated 5 years ago
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- SevenBridges Python Api bindings☆46Feb 14, 2025Updated last year
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- ☆13Dec 19, 2018Updated 7 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 10 months ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Little code snippets that do (hopefully) useful things☆23Jul 24, 2023Updated 2 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- A minimal and serverless data pipeline☆13Feb 22, 2022Updated 4 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Dec 8, 2025Updated 2 months ago
- Python for Bioinformatics☆262Oct 1, 2020Updated 5 years ago
- CS273B Deep Learning for Genomics Course Materials☆34Sep 9, 2020Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- Python interface for SIMD Smith-Waterman Library☆38May 18, 2022Updated 3 years ago
- Linked Data frontend for SPARQL endpoints for Django☆18Sep 1, 2014Updated 11 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 7 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago