☆69Jun 21, 2022Updated 4 years ago
Alternatives and similar repositories for oncotator
Users that are interested in oncotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MuTect -- Accurate and sensitive cancer mutation detection☆105Feb 13, 2023Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 6 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆179Jan 7, 2020Updated 6 years ago
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- ☆44Nov 18, 2019Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read☆12Jun 17, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- For mapping terms to standardized colours☆10Nov 21, 2017Updated 8 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- ☆57Jan 11, 2023Updated 3 years ago
- Tools for working with SAM/BAM data☆614Dec 22, 2024Updated last year
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Oct 14, 2026Updated 2 weeks ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆76Jun 26, 2023Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆253Aug 5, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 6 months ago
- Identifying recurrent mutations in cancer☆40Mar 4, 2021Updated 5 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆119Apr 2, 2025Updated last year