☆69Jun 21, 2022Updated 4 years ago
Alternatives and similar repositories for oncotator
Users that are interested in oncotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆105Feb 13, 2023Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 5 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆179Jan 7, 2020Updated 6 years ago
- ☆44Nov 18, 2019Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆57Jan 11, 2023Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Identifying recurrent mutations in cancer☆40Mar 4, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated 2 weeks ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆44Mar 10, 2020Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 6 years ago
- Genome data visualizations☆227Jan 10, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated last month
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- ☆13Jan 8, 2026Updated 9 months ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆214May 28, 2023Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago