soccin / BIC-variants_pipelineLinks
BIC@MSKCC Variants Pipeline
☆24Updated 2 years ago
Alternatives and similar repositories for BIC-variants_pipeline
Users that are interested in BIC-variants_pipeline are comparing it to the libraries listed below
Sorting:
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- ☆69Updated 3 years ago
- ☆43Updated last year
- ☆26Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆46Updated 6 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 8 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆43Updated 6 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Updated 6 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Updated last year
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago